Information for 4-GTTGCTATGG (Motif 8)

C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G
Reverse Opposite:
A T G C G A T C G T C A C G A T C T G A A C T G G A T C C T G A T G C A G A T C
p-value:1e-13
log p-value:-3.050e+01
Information Content per bp:1.732
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.01%
Number of Background Sequences with motif383.8
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets46.4 +/- 21.8bp
Average Position of motif in Background47.6 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTATGG--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCTATGG
CTGTTGCTAGGS
 A C G T A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.91
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCTATGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTATGG--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GTTGCTATGG----
GTTGCCATGGNAAC
 C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTATGG---
NGTTGCCATGGCAA
 A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTATGG---
GGTTGCCATGGCAA
 A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTATGG-----
CGTTGCCATGGCAACG
 A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTTGCTATGG-----
GTTGCCATGGCAACM
 C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCTATGG----
KGTTGCTAGGMAACA
 A C G T C T A G A C G T G A C T C T A G A G T C A G C T G C T A C A G T C T A G T A C G A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A