Information for 11-TCTKCCTGCCTGYCTG (Motif 13)

G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G
Reverse Opposite:
A G T C G T C A A C T G C T A G A G T C C G T A A T C G C T A G A G T C C G T A A C T G T A C G G T A C C G T A A C T G C T G A
p-value:1e-8
log p-value:-1.854e+01
Information Content per bp:1.830
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.9 +/- 15.9bp
Average Position of motif in Background63.1 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCTKCCTGCCTGYCTG-
--GTCATGCHTGRCTGS
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TCTKCCTGCCTGYCTG-
-------VBSYGTCTGG
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:9
Orientation:forward strand
Alignment:TCTKCCTGCCTGYCTG-
---------CTGTCTGG
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCTKCCTGCCTGYCTG
-CTGGCAGNCTGCCA-
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCTKCCTGCCTGYCTG--
CCTTCCTTCCTTCCTTCC
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C G T A C G T
A G T C G A T C G A C T C A G T A T G C A G T C A C G T A C G T A T G C G T A C A G C T A G C T G A T C A G T C A G C T A G C T A G T C A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.56
Offset:9
Orientation:forward strand
Alignment:TCTKCCTGCCTGYCTG-
---------TWGTCTGV
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TCTKCCTGCCTGYCTG
-----TTGCGTGCVA-
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TCTKCCTGCCTGYCTG------
-----NNTNNTGTCTGGNNTNG
 G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TCTKCCTGCCTGYCTG
CACTTCCTGT-------
 A C G T G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCTKCCTGCCTGYCTG-
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T G A C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G