Information for 10-CTTTTTGAGCTAT (Motif 23)

A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
Reverse Opposite:
C G T A A C G T C G T A C T A G A G T C A C G T A G T C C G T A C T G A C G T A C G T A C G T A A C T G
p-value:1e-9
log p-value:-2.208e+01
Information Content per bp:1.887
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 25.1bp
Average Position of motif in Background76.6 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTTGAGCTAT
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTTTTTGAGCTAT
CCTTTTATAGNC--
 A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTTGAGCTAT
TGACCTTTTGACCTTT
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTTGAGCTAT
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTGAGCTAT-
WCATTTTGKCCTCYT
 A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T A C G T
C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CTTTTTGAGCTAT
TTGACCTTTTGACCTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T A C G T

RARA/MA0729.1/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CTTTTTGAGCTAT
CATTGACCTTTTGACCTC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C A C G T

LEF1/MA0768.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTTGAGCTAT
AACCCTTTGATCTTT
 A C G T A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
C G T A G C T A A G T C A G T C A G T C G A C T A G C T C G A T A T C G C G T A G C A T A T G C G A C T G A C T A G C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTTGAGCTAT
TGACCTTTTGACCTC-
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTGAGCTAT
NTTTTACGAGN---
 A C G T A G T C A C G T A C G T A C G T A G C T C G A T C T A G C G T A A C T G A G T C A C G T G T C A A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T