Information for 3-TYCYTTAAAAAATGKA (Motif 4)

A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A
Reverse Opposite:
A C G T G T C A A G T C C G T A A C G T A C G T A C G T A G C T G A C T C G A T C G T A G C T A C T G A A C T G T C G A C G T A
p-value:1e-12
log p-value:-2.809e+01
Information Content per bp:1.764
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.0 +/- 26.5bp
Average Position of motif in Background27.3 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TYCYTTAAAAAATGKA
TACTGGAAAAAAAA--
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TYCYTTAAAAAATGKA---
----GAAAAAATTGCAAGG
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TYCYTTAAAAAATGKA---
--ATAAGAACAAAGGACTA
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0116.1_Elf3_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TYCYTTAAAAAATGKA
GTTCAAAAAAAAAATTC-
 A C G T A C G T A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C A C G T

HLTF/MA0109.1/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TYCYTTAAAAAATGKA-
-------NNATAAGGNN
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

PB0182.1_Srf_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TYCYTTAAAAAATGKA
GTTAAAAAAAAAAATTA
 A C G T A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TYCYTTAAAAAATGKA--
--AAACAGACAAAGGAAT
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A A C G T A C G T
A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TYCYTTAAAAAATGKA
-------RACAAWGG-
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TYCYTTAAAAAATGKA
------RAACAATGGN
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TYCYTTAAAAAATGKA
-----AAAACAATGG-
 A C G T A G C T T G A C G A C T C G A T C G A T C G T A C T G A C T G A C G T A C G T A C G T A C G A T A C T G A C G T C G T A
A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T