Information for 14-YRGGCCAAACAAW (Motif 27)

A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A
Reverse Opposite:
G C A T A C G T A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C C T G A
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.883
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets28.1 +/- 14.0bp
Average Position of motif in Background50.6 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-YRGGCCAAACAAW---
AACACCAAAACAAAGGA
 A C G T A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.67
Offset:7
Orientation:reverse strand
Alignment:YRGGCCAAACAAW
-------AACAAT
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:YRGGCCAAACAAW
------NAACAAT
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:YRGGCCAAACAAW
----GTAAACAAT
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-YRGGCCAAACAAW
ACTAGCCAATCA--
 A C G T A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:YRGGCCAAACAAW--
-----VRAACAATGG
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:YRGGCCAAACAAW
--TGCCAA-----
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.63
Offset:6
Orientation:forward strand
Alignment:YRGGCCAAACAAW---
------RAACAATGGN
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YRGGCCAAACAAW
CGTGCCAAG----
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:YRGGCCAAACAAW--
-----RNAACAATGG
 A G C T C T A G C T A G A C T G G T A C A G T C C G T A C G T A G T C A A G T C G T C A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G