Information for 2-TCAMRKARCC (Motif 17)

C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C
Reverse Opposite:
A C T G A T C G G A T C A C G T G T C A A G C T A C G T A C G T C T A G C G T A
p-value:1e-10
log p-value:-2.495e+01
Information Content per bp:1.710
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.15%
Number of Background Sequences with motif452.5
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets58.4 +/- 24.4bp
Average Position of motif in Background48.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCAMRKARCC
GCACGTACCC
 C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

E-box(bHLH)/Promoter/Homer

Match Rank:2
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCAMRKARCC--
TCACGTGACCGG
 C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C A C G T A C G T
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCAMRKARCC
GCACGTAY--
 C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TCAMRKARCC
BGCACGTA---
 A C G T C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

TEF/MA0843.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TCAMRKARCC
TATTACGTAACA
 A C G T A C G T C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C
A G C T T C G A G C A T C G A T C T G A G A T C C T A G A G C T G C T A C T G A A G T C T G C A

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TCAMRKARCC--
-AAGATATCCTT
 C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C A C G T A C G T
A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

HLF/MA0043.2/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TCAMRKARCC
CATTACGTAACC
 A C G T A C G T C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C
G A T C T C G A G C A T A C G T C T G A A G T C T C A G G A C T G T C A C G T A A G T C G T A C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TCAMRKARCC--
ACAAAGGNBCCT
 C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C A C G T A C G T
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TCAMRKARCC
TBGCACGCAA--
 A C G T A C G T C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TCAMRKARCC-
---ATAATCCC
 C G A T A G T C G T C A G T C A C T G A C A G T C G T A C T A G A T G C A G T C A C G T
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C