Information for 2-WRAAGRAWGGATT (Motif 6)

C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G T C A G T C C G A T A C G T A G C T A G T C A C G T A C G T A G C T C G A T
p-value:1e-12
log p-value:-2.784e+01
Information Content per bp:1.871
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.9 +/- 32.0bp
Average Position of motif in Background58.9 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---WRAAGRAWGGATT-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:WRAAGRAWGGATT---
------VRGGATTARN
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:WRAAGRAWGGATT-------
---TGAAGGGATTAATCATC
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:WRAAGRAWGGATT-------
---AGAGGGGATTAATTTAT
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:WRAAGRAWGGATT-------
---NANAGGGATTAATTATN
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

Dmbx1/MA0883.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:WRAAGRAWGGATT------
--TGAACCGGATTAATGAA
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:WRAAGRAWGGATT------
--TGAACCGGATTAATGAA
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:WRAAGRAWGGATT-
------NGGGATTA
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:WRAAGRAWGGATT----
--AAAAACGGATTATTG
 C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---WRAAGRAWGGATT-
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A C T G A T C G A G T C A A C T G C T G A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A