Information for 20-GSCRYGGCAGGMG (Motif 41)

A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G
Reverse Opposite:
A G T C A C T G A G T C A G T C A C G T A C T G A G T C A G T C C T G A A G C T A C T G T A G C A G T C
p-value:1e-6
log p-value:-1.455e+01
Information Content per bp:1.874
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.5 +/- 24.5bp
Average Position of motif in Background48.5 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GSCRYGGCAGGMG---
----SDGCAGGTGCNS
 A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GSCRYGGCAGGMG-
--CACAGCAGGGGG
 A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GSCRYGGCAGGMG---
-DCHCAGCAGGRGGCC
 A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GSCRYGGCAGGMG-
CCACACAGCAGGAGA
 A C G T A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GSCRYGGCAGGMG-
CCACACAGCAGGAGA
 A C G T A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GSCRYGGCAGGMG--
-----NNCAGGTGNN
 A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GSCRYGGCAGGMG-
GAGCACAGCAGGACA
 A C G T A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ID4/MA0824.1/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GSCRYGGCAGGMG--
-----GACAGGTGTN
 A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GSCRYGGCAGGMG
ATGCCCGGGCATGT-
 A C G T A C G T A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GSCRYGGCAGGMG-
-----AACAGGTGT
 A C T G A T C G A G T C C T G A A G C T A C T G A C T G A G T C C G T A A C T G A C T G G T A C C T A G A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T