Information for 3-TCAGTGACACGGGTBT (Motif 3)

A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
Reverse Opposite:
C G T A T A C G T G C A A T G C G T A C G A T C A C T G C G A T C T A G A G C T G T A C T C G A A G T C A C G T A C T G G T C A
p-value:1e-13
log p-value:-3.041e+01
Information Content per bp:1.714
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.6 +/- 27.4bp
Average Position of motif in Background42.1 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HEY2/MA0649.1/Jaspar

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:TCAGTGACACGGGTBT
-----GACACGTGCC-
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C A C G T

HEY1/MA0823.1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TCAGTGACACGGGTBT
-----GGCACGTGTC-
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T C A G G A T C T C G A A T G C A C T G A G C T T C A G A G C T A T G C A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TCAGTGACACGGGTBT
-----AACACGTGTT-
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T

Hes2/MA0616.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCAGTGACACGGGTBT
-TAACGACACGTGC--
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TCAGTGACACGGGTBT
-----NACACGTGCN-
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TCAGTGACACGGGTBT
-----GCCACGTGT--
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TCAGTGACACGGGTBT
-----GHCACGTG---
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCAGTGACACGGGTBT
NTGATTGACAGN-----
 A C G T A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCAGTGACACGGGTBT
BTGABTGACAGS-----
 A C G T A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TCAGTGACACGGGTBT
-----GNCACGTG---
 A C G T G T A C C G T A A C T G A C G T A C T G C T G A A G T C C G T A G T A C C A T G A C T G A T C G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T