Information for 15-CGAGCCTGRCCTGMCT (Motif 28)

A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
Reverse Opposite:
C G T A T A C G A C G T G T A C C G T A A C T G A C T G A G C T A G T C C G T A C T A G A C T G A T G C A G C T T A G C A T C G
p-value:1e-8
log p-value:-2.006e+01
Information Content per bp:1.756
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.6 +/- 24.7bp
Average Position of motif in Background47.1 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
------TGACCTYA--
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
------TGACCTARTT
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
------TGACCT----
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
------TGACCTTGAT
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
-----GTGACCTT---
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT---
-----TTGACCTANTTATN
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
TGACCTTGACCT----
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGAGCCTGRCCTGMCT
GGGGCCGAGGCCTG---
 A C G T A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
TGACCTTGACCT----
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CGAGCCTGRCCTGMCT
-----CTGACCTTTG-
 A T G C A C T G C T G A T A C G G T A C A G T C A C G T A C T G C T G A A G T C A G T C C G A T A C T G T G C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T