Information for 13-AGGCAGCCCAATCCTC (Motif 24)

C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C
Reverse Opposite:
C T A G C T G A A C T G A T C G C G T A A C G T C G A T A C T G A C T G A C T G G T A C C G A T A C T G G T A C A G T C A C G T
p-value:1e-9
log p-value:-2.192e+01
Information Content per bp:1.723
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif18.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets43.4 +/- 25.8bp
Average Position of motif in Background44.5 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AGGCAGCCCAATCCTC--
-------CTAATCCTCTT
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AGGCAGCCCAATCCTC----
----AGGCTAATCCCCAANG
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:AGGCAGCCCAATCCTC---
-------SSAATCCACANN
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

MAFK/MA0496.1/Jaspar

Match Rank:4
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGGCAGCCCAATCCTC
CTGAGTCAGCAATTT----
 A C G T A C G T A C G T C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:5
Score:0.51
Offset:6
Orientation:forward strand
Alignment:AGGCAGCCCAATCCTC-
------TCCAATCCACA
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:AGGCAGCCCAATCCTC
------CCTAATCCGC
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGGCAGCCCAATCCTC
NGTCAGCANTTT----
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AGGCAGCCCAATCCTC
------GCTAATCCCC
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AGGCAGCCCAATCCTC--
--GNNAGCTAATCCCCCN
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C A C G T A C G T
A C G T A C G T A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGGCAGCCCAATCCTC
-GTCAGCANNTN----
 C G T A C T A G C A T G T A G C C G T A A C T G A G T C G T A C A G T C C G T A C G T A C G A T A T G C G T A C A G C T A G T C
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T