Information for 3-ATWTGATTGC (Motif 21)

C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C
Reverse Opposite:
A T C G A T G C G T C A T G C A G A C T A G T C G T C A C G T A T C G A A C G T
p-value:1e-9
log p-value:-2.271e+01
Information Content per bp:1.675
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.75%
Number of Background Sequences with motif861.5
Percentage of Background Sequences with motif1.78%
Average Position of motif in Targets44.1 +/- 25.6bp
Average Position of motif in Background51.9 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ATWTGATTGC
--TTGATTGN
 C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATWTGATTGC---
-TTTGATTGATGN
 C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C A C G T A C G T A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATWTGATTGC--
-CTTGAGTGGCT
 C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATWTGATTGC
CAAGATGGCGGC
 A C G T A C G T C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATWTGATTGC-
-GTTAATGGCC
 C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATWTGATTGC
CAAGATGGCGGC
 A C G T A C G T C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATWTGATTGC----
NNNNGTTGATTGGGTCG
 A C G T A C G T A C G T C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C A C G T A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ATWTGATTGC--
--TTGAGTGSTT
 C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ATWTGATTGC----
--BTGABTGACAGS
 C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

BHLHE23/MA0817.1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----ATWTGATTGC
NAACATATGTTT--
 A C G T A C G T A C G T A C G T C G T A A G C T C G A T A C G T C T A G C T G A A C G T A C G T A T C G T A G C
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T A C G T A C G T