Information for 11-TCTAAAACTCCARACC (Motif 19)

A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C
Reverse Opposite:
C T A G A C T G A C G T A G C T C G A T A C T G C T A G C G T A A C T G A C G T A C G T A C G T G A C T G T C A C T A G C T G A
p-value:1e-10
log p-value:-2.361e+01
Information Content per bp:1.730
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.0 +/- 21.3bp
Average Position of motif in Background51.8 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TCTAAAACTCCARACC-----
----CAAATCCAGACATCACA
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TCTAAAACTCCARACC
------ATGCCAGACN
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TCTAAAACTCCARACC
GGCAAAAGTCCAATAA
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0042.1_Mafk_1/Jaspar

Match Rank:4
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TCTAAAACTCCARACC-
--TAAAAATGCTGACTT
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C A C G T
A C G T A C G T C G A T C G T A C G T A C G T A G C T A C G T A G A C T C A T G G T A C G C A T C A T G C G T A A G T C G C A T G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TCTAAAACTCCARACC-
---------CCAGACAG
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:TCTAAAACTCCARACC---
---------CCAGACRSVB
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TCTAAAACTCCARACC
TTTGAAACCG------
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:TCTAAAACTCCARACC--
-------CTTCACACCTA
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.47
Offset:-3
Orientation:forward strand
Alignment:---TCTAAAACTCCARACC
NGYCATAAAWCH-------
 A C G T A C G T A C G T A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:10
Score:0.47
Offset:3
Orientation:forward strand
Alignment:TCTAAAACTCCARACC--
---ATAAACCGAAACCAA
 A G C T G A T C A C G T C T G A G T C A C G T A T C G A G T A C C G A T A G T C A G T C G C T A C T G A C G T A G T A C A G T C A C G T A C G T
A C G T A C G T A C G T C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A