Information for 1-AATGAAGAAT (Motif 17)

C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T
Reverse Opposite:
G T C A C G A T A C G T A T G C A C G T A G C T A G T C G C T A C G A T C G A T
p-value:1e-10
log p-value:-2.467e+01
Information Content per bp:1.837
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif147.8
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets55.0 +/- 30.2bp
Average Position of motif in Background53.0 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AATGAAGAAT-
-ATGAATATTC
 C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATGAAGAAT---
GAATGACGAATAAC
 A C G T C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

PB0070.1_Sox30_1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AATGAAGAAT------
AATGAACAATGGAATT
 C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AATGAAGAAT-----
NNNNNGAACAATTGANN
 A C G T A C G T C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AATGAAGAAT
--NGAAGC--
 C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AATGAAGAAT---
-ATGCATAATTCA
 C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T A C G T A C G T
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AATGAAGAAT------
TNNAGAACAATANATNN
 A C G T C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------AATGAAGAAT
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0072.1_Sox5_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AATGAAGAAT-----
TTTAGAACAATAAAAT
 A C G T C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AATGAAGAAT-----
TCACGGAACAATAGGTG
 A C G T A C G T C G T A C G T A C G A T A C T G T C G A C G T A A T C G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G