Information for 5-CTCTATARAGCCG (Motif 6)

A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
Reverse Opposite:
A G T C A C T G A C T G G T A C A C G T G A C T A C G T C T G A G A C T C G T A C A T G C G T A A T C G
p-value:1e-17
log p-value:-4.123e+01
Information Content per bp:1.739
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.5 +/- 8.6bp
Average Position of motif in Background31.7 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTCTATARAGCCG--
GTATAAAAGGCGGGG
 A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTCTATARAGCCG--
GTATAAAAGGCGGGG
 A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

MEF2B/MA0660.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCTATARAGCCG
GCTATAAATAGC--
 A C G T A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCTATARAGCCG
ACTATAAATAGA--
 A C G T A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTCTATARAGCCG
TCTAAAAATAGA--
 A C G T A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTCTATARAGCCG
NGYCATAAAWCH-
 A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTCTATARAGCCG
GNCTATAAAAGG---
 A C G T A C G T A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTCTATARAGCCG
GCTAAAAATAGC--
 A C G T A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTCTATARAGCCG
KCCAAAAATAGC--
 A C G T A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTCTATARAGCCG
----ACAAAG---
 A T G C A C G T G T A C G A C T C T G A A G C T C G T A C T G A C G T A A C T G G T A C G T A C A C T G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T