Information for 18-GGGTTATAAA (Motif 23)

C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T C G T A A C G T C G T A T G C A A G T C A G T C A G T C
p-value:1e-9
log p-value:-2.130e+01
Information Content per bp:1.892
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif26.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets54.2 +/- 15.9bp
Average Position of motif in Background38.2 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GGGTTATAAA----
TAAGGTAATAAAATTA
 A C G T A C G T C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GGGTTATAAA----
AAAGGTAATAAAATTT
 A C G T A C G T C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GGGTTATAAA---
-NGYCATAAAWCH
 C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GGGTTATAAA--
--GTCATAAAAN
 C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GGGTTATAAA--
-GGTAATAAAAA
 C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGGTTATAAA-
AAGCCATAAAA
 C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GGGTTATAAA--------
---GTATAAAAGGCGGGG
 C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GGGTTATAAA--------
---GTATAAAAGGCGGGG
 C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGGTTATAAA-
--GCAATAAAA
 C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGGTTATAAA----
AATAGGGTATCAATATT
 A C G T A C G T A C G T C T A G A C T G A C T G A C G T A C G T C G T A A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T