Information for 9-CGCCCTCTAGCTGCGC (Motif 18)

A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A G T C G T C A A C T G A G T C A G C T C G T A A T C G G T C A A C T G A C T G A C T G A G T C C T A G
p-value:1e-12
log p-value:-2.955e+01
Information Content per bp:1.867
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.8 +/- 23.7bp
Average Position of motif in Background83.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CGCCCTCTAGCTGCGC
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGCCCTCTAGCTGCGC
NTGCCCTTGGGCGN---
 A C G T A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGCCCTCTAGCTGCGC
-GGCCYCCTGCTGDGH
 A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CGCCCTCTAGCTGCGC--
---NNTCCTGCTGTGNNN
 A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGCCCTCTAGCTGCGC
-GACCCCCCGCTGCGC
 A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CGCCCTCTAGCTGCGC--
---TCNCCTGCTGNGNNN
 A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGCCCTCTAGCTGCGC
TGCCCCCGGGCA----
 A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCTCTAGCTGCGC
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CGCCCTCTAGCTGCGC
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CGCCCTCTAGCTGCGC--
---TNTCCTGCTGTGNNG
 A G T C A C T G A G T C A G T C T A G C A C G T A T G C C G A T C T G A A C T G A G T C A C G T A C T G A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G