Information for 10-GCGCCTTTTATAG (Motif 13)

C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G
Reverse Opposite:
A G T C A C G T G C T A A C G T C T G A C G T A C T G A C T G A A C T G A T C G A T G C C A T G A G T C
p-value:1e-13
log p-value:-3.037e+01
Information Content per bp:1.785
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets48.4 +/- 17.5bp
Average Position of motif in Background39.2 +/- 39.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.85
Offset:3
Orientation:forward strand
Alignment:GCGCCTTTTATAG--
---CCTTTTATAGNC
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCTTTTATAG
NNNNNNCTTTTATAN
 A C G T A C G T C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCTTTTATAG
NNNNNNCTTTTATAN
 A C G T A C G T C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCGCCTTTTATAG--
-----TTTTATTRGN
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GCGCCTTTTATAG--
-----TTTTATKRGG
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCGCCTTTTATAG--
-----TTTAATTGCN
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCGCCTTTTATAG---
-----TTTTATGGCTN
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCGCCTTTTATAG-
-----TTTTATTGC
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCGCCTTTTATAG----
-NNANTTTTATTGGNNN
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T A C G T A C G T A C G T
A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCGCCTTTTATAG-
----NTTTTATTGG
 C T A G G A T C A T C G A T G C A G T C A G C T A G C T G C A T A G C T G T C A C A G T C G T A C T A G A C G T
A C G T A C G T A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G