Information for 3-AGAGTGWAWAWGVTYA (Motif 3)

C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
Reverse Opposite:
C G A T C T G A C G T A A C T G T G A C C G T A A C G T C G A T C G A T C G A T A T G C C G T A A G T C A C G T A T G C C G A T
p-value:1e-14
log p-value:-3.296e+01
Information Content per bp:1.674
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif26.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.0 +/- 23.7bp
Average Position of motif in Background42.8 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX8/MA0868.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGWAWAWGVTYA
AACACTGCACATTGTT-
 A C G T C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGWAWAWGVTYA
NCWRWGTAAACANSV---
 A C G T A C G T C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGWAWAWGVTYA
CAAAGTAAACANNNN--
 A C G T C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGAGTGWAWAWGVTYA
TATGTAAACANG----
 C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGWAWAWGVTYA
NCTAAGTAAACA------
 A C G T A C G T C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGAGTGWAWAWGVTYA
---ATGAATATTC---
 C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGAGTGWAWAWGVTYA
WAAGTAAAYA------
 C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGAGTGWAWAWGVTYA
---ATGMATATDC---
 C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAGTGWAWAWGVTYA
AAAGTAAACA------
 C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGAGTGWAWAWGVTYA
AAAGTAAACA------
 C G T A A T C G C G T A C T A G A C G T T A C G G C T A C G T A G C T A C G T A C G A T A C T G T G A C C G A T G A C T C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T