Information for 3-RTCTGAACTCAGATCA (Motif 3)

C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
Reverse Opposite:
A G C T C T A G C G T A A G C T G A T C C G A T A C T G C G T A C T A G A C G T C G A T A G T C G T C A C T A G C G T A G A T C
p-value:1e-16
log p-value:-3.808e+01
Information Content per bp:1.743
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.1 +/- 16.3bp
Average Position of motif in Background62.2 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:RTCTGAACTCAGATCA
----GTAATCDGATTA
 C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
A C G T A C G T A C G T A C G T C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RTCTGAACTCAGATCA
ATTTGAATT-------
 C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---RTCTGAACTCAGATCA
AAGATCGGAANTNNNA---
 A C G T A C G T A C G T C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RTCTGAACTCAGATCA
AAGGCGAAATCATCGCA
 A C G T C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0171.1_Sox18_2/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-RTCTGAACTCAGATCA
NNNNTGAATTCANNNC-
 A C G T C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:RTCTGAACTCAGATCA
---TGACCTYA-----
 C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:RTCTGAACTCAGATCA---
---TGGACTTTGNNCTNTG
 C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:RTCTGAACTCAGATCA-
---TGACCTTTGACCTC
 C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A A C G T
A C G T A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:RTCTGAACTCAGATCA-
-ATTGGACTTTGACCCC
 C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A A C G T
A C G T C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:RTCTGAACTCAGATCA
--CTGACCTTTG----
 C T A G A C G T A G T C A C G T C T A G C G T A C G T A A G T C A C G T A G T C C G T A C A T G C T G A A C G T A G T C C T G A
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T