Information for 12-TGTAAGCTTAMTRAGA (Motif 16)

A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
Reverse Opposite:
A C G T A G T C C G A T A G C T C G T A A C T G A G C T C G T A C G T A A C T G T G A C A C G T G A C T C T G A G T A C C G T A
p-value:1e-12
log p-value:-2.835e+01
Information Content per bp:1.762
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif15.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.0 +/- 21.3bp
Average Position of motif in Background66.1 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGTAAGCTTAMTRAGA
--CAAGCTT-------
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGTAAGCTTAMTRAGA
----ATATTAATTAA-
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:3
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TGTAAGCTTAMTRAGA
-------TTAATTAN-
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:TGTAAGCTTAMTRAGA
-------TTAATTAN-
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGTAAGCTTAMTRAGA
ATGCATAATTAATGAG-
 A C G T A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGTAAGCTTAMTRAGA
-GTGACCTT-------
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGTAAGCTTAMTRAGA----
---GGGTTTAATTAAAATTC
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TGTAAGCTTAMTRAGA----
---GACGATAATGAGCTTGC
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:TGTAAGCTTAMTRAGA
------TTTAAT----
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGTAAGCTTAMTRAGA
-CTAATATTGCTAAA-
 A C G T C A T G A G C T C G T A C G T A A C T G T G A C A C G T A C G T C T G A G T A C A C G T C T G A C G T A T C A G C G T A
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T