Information for 19-CACAATAGCT (Motif 42)

A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G A T G C A C G T C G T A A C G T A C G T A C T G A C G T A C T G
p-value:1e-7
log p-value:-1.674e+01
Information Content per bp:1.961
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.6 +/- 27.0bp
Average Position of motif in Background60.7 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CACAATAGCT-
CTCACACAATGGCGC
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------CACAATAGCT-
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CACAATAGCT
GACAATGNN-
 A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CACAATAGCT
GAACAATGG--
 A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CACAATAGCT
RNAACAATGG--
 A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CACAATAGCT---
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CACAATAGCT
RAACAATGGN-
 A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CACAATAGCT-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CACAATAGCT---
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CACAATAGCT--
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A A T C G A G T C A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C