Information for 24-AAMCCKMASTGGAKKA (Motif 38)

C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A
Reverse Opposite:
A G C T G T C A G T C A A C G T A G T C A G T C C G T A A T C G A C G T A C G T G T A C A C T G A C T G A C G T A C G T A C G T
p-value:1e-8
log p-value:-2.017e+01
Information Content per bp:1.837
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 29.5bp
Average Position of motif in Background49.1 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAMCCKMASTGGAKKA
AATNTTAAGTGGNTNN
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:AAMCCKMASTGGAKKA
--------GTGGAT--
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AAMCCKMASTGGAKKA--
----TTGCCCGGATTAGG
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

PH0126.1_Obox6/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AAMCCKMASTGGAKKA---
----AAAAACGGATTATTG
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AAMCCKMASTGGAKKA
AAATTCAAGTGGNTTN
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:AAMCCKMASTGGAKKA-
---------GGGATTAA
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AAMCCKMASTGGAKKA-
------AAGAGGATTAG
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:AAMCCKMASTGGAKKA--
----------GGATTAGC
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AAMCCKMASTGGAKKA----
----CGTTGGGGATTAGCCT
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:AAMCCKMASTGGAKKA--
---------GGGATTANN
 C G T A C G T A G T C A G T A C A G T C C A T G G T C A G T C A A T G C A C G T A C T G A C T G C G T A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G