Information for 16-GCRKWASYARTMWWWG (Motif 22)

C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
Reverse Opposite:
G T A C C G A T G C A T G C T A A C G T T C G A A G C T A C G T C T G A T A C G A C G T G C A T T G A C G A C T A C T G G T A C
p-value:1e-15
log p-value:-3.467e+01
Information Content per bp:1.726
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.2 +/- 23.7bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCRKWASYARTMWWWG
ACCGTGACTAATTNN--
 A C G T C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCRKWASYARTMWWWG
-GTTAACTAGN-----
 C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCRKWASYARTMWWWG
--NNTNNCAATATTAG
 C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCRKWASYARTMWWWG
--NNTNNCAATATTAG
 C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCRKWASYARTMWWWG
TCTTTANTAATANN--
 C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T A C G T A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GCRKWASYARTMWWWG
ATGCATAATTAATGAG--
 A C G T A C G T C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GCRKWASYARTMWWWG-
-CAAAACCAATTAATTT
 C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G A C G T
A C G T T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PH0062.1_Hoxb7/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:GCRKWASYARTMWWWG---
---GTAGTAATTAATGCAA
 C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A G C T T G C A A C T G G A C T G T C A G C T A C G A T C A G T C T G A T G C A A C G T C A T G A T G C G C T A C T G A

ETV6/MA0645.1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GCRKWASYARTMWWWG
AGCGGAAGTG-------
 A C G T C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G
T G C A A T C G T G A C C A T G C A T G C T G A C G T A T C A G A G C T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:10
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GCRKWASYARTMWWWG---
--ACAAGCAATTAATGAAT
 C A T G A G T C C T G A A C T G C G T A T G C A A T G C A G C T G T C A T C G A A C G T G T C A C G A T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T