Information for 14-ACASACAATA (Motif 43)

C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A
Reverse Opposite:
A C G T T G C A A C G T A C G T A C T G A C G T A T G C A C G T A T C G A C G T
p-value:1e-5
log p-value:-1.249e+01
Information Content per bp:1.887
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif101.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets29.8 +/- 11.6bp
Average Position of motif in Background53.3 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ACASACAATA----
CTCACACAATGGCGC
 A C G T C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:ACASACAATA--
---GACAATGNN
 C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ACASACAATA----
TCACGGAACAATAGGTG
 A C G T A C G T A C G T C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ACASACAATA--
--RAACAATGGN
 C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ACASACAATA
BCAGACWA--
 C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACASACAATA--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ACASACAATA-
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACASACAATA-
-RNAACAATGG
 C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACASACAATA
GTAAACAAT-
 C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACASACAATA
AATAAACAATN
 A C G T C G T A A T G C C G T A A T C G C G T A A G T C C G T A C G T A A C G T C G T A
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A