Information for 14-GTCGGGCATCACC (Motif 17)

A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C
Reverse Opposite:
A C T G A C T G A G C T A C T G C T G A A C G T A C T G A G T C A G T C G T A C A C T G C G T A A G T C
p-value:1e-10
log p-value:-2.508e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.6 +/- 19.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTCGGGCATCACC
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTCGGGCATCACC
NGTGGGCAT----
 A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTCGGGCATCACC
GGTCTGGCAT----
 A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTCGGGCATCACC
TGTCTGDCACCT--
 A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTCGGGCATCACC---
AATAGGGTATCAATTAT
 A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

PH0162.1_Six2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTCGGGCATCACC---
AATGGGGTATCACGTTT
 A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

Six3/MA0631.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCGGGCATCACC---
GATAGGGTATCACTAAT
 A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCGGGCATCACC---
GATAGGGTATCACTAAT
 A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTCGGGCATCACC-----
--NNGGCGACACCTCNNN
 A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

PB0059.1_Six6_1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCGGGCATCACC---
AATAGGGTATCATATAT
 A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A G A C T A G T C C T G A A G T C A G T C A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T