Information for 6-CCTCAGCCATGSATGG (Motif 8)

A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G
Reverse Opposite:
A G T C A G T C C G T A A C G T T A G C A G T C G C T A C G A T C T A G A T C G A T G C A C G T A C T G C G T A T A C G A T C G
p-value:1e-10
log p-value:-2.322e+01
Information Content per bp:1.757
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 23.0bp
Average Position of motif in Background24.2 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CCTCAGCCATGSATGG-
--SCAGYCADGCATGAC
 A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCTCAGCCATGSATGG--
--GCAGCCAAGCGTGACN
 A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G A C G T A C G T
A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTCAGCCATGSATGG-
CGTCACGCATGACTGCA
 A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX5/MA0014.2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCCATGSATGG-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTCAGCCATGSATGG-
CGTCACGCATGACTGCA
 A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTCAGCCATGSATGG
-CACAGN---------
 A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCTCAGCCATGSATGG
GGCCACACCCAN------
 A C G T A C G T A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCTCAGCCATGSATGG
GCCACACCCA-------
 A C G T A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTCAGCCATGSATGG
---AAGGCAAGTGT--
 A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCCATGSATGG
GGCCACACCCA-------
 A C G T A C G T A T G C A T G C C G A T A G T C C G T A A T C G A T G C A G T C G C T A C A G T A C T G A T C G G T C A A C G T A C T G C T A G
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T