Information for 5-AAGCAABTTGAGAGAT (Motif 7)

C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A C G A T A G T C G C A T G T A C A C G T A G T C G T C A C G T A T A G C C G A T A G C T A C T G A G T C A G C T C G A T
p-value:1e-10
log p-value:-2.322e+01
Information Content per bp:1.774
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.7 +/- 26.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox11/MA0869.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGCAABTTGAGAGAT
-AACAATTTCAGTGTT
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:AAGCAABTTGAGAGAT--
------TTTGATTGATGN
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

SOX4/MA0867.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGCAABTTGAGAGAT
GAACAATTGCAGTGTT
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAGCAABTTGAGAGAT
------CTYRAGTGSY
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AAGCAABTTGAGAGAT-
-------TTGAGTGSTT
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AAGCAABTTGAGAGAT
------BTBRAGTGSN
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAGCAABTTGAGAGAT-
------CTTGAGTGGCT
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

SOX21/MA0866.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGCAABTTGAGAGAT
-AACAATGGTAGTGTT
 C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAGCAABTTGAGAGAT
ATAACCACTTGAAAATT
 A C G T C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAGCAABTTGAGAGAT
AAGGCAAGTGT------
 A C G T C G T A C T G A A C T G A G T C C T G A C G T A A C T G A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T