Information for 19-GAMCTCTAGT (Motif 44)

A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T
Reverse Opposite:
G T C A T G A C A C G T C G T A A T C G C G T A A C T G A C G T A G C T A G T C
p-value:1e-3
log p-value:-8.260e+00
Information Content per bp:1.838
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif82.2
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets56.5 +/- 31.5bp
Average Position of motif in Background49.0 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0049.1_Nr2f2_1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GAMCTCTAGT-
NNNNTGACCTTTNNNN
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GAMCTCTAGT-
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAMCTCTAGT
TGACCYCT---
 A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAMCTCTAGT
TGACCTTGAT-
 A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAMCTCTAGT
GGGAATTGTAGT
 A C G T A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAMCTCTAGT
TGACCTYA---
 A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAMCTCTAGT
CNNTTGACCTTTG--
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAMCTCTAGT-----
TGACCTNTAGTAACCC
 A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAMCTCTAGT
TGACCT-----
 A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAMCTCTAGT-
TGACCTTTNCNT
 A C G T A C T G C T G A G T C A A G T C A C G T A T G C A C G T C G T A A C T G A C G T A C G T
A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T