Information for 13-CGACACGGGG (Motif 40)

A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A G T C A C T G A C G T A C T G A C G T A G T C A C T G
p-value:1e-4
log p-value:-1.071e+01
Information Content per bp:1.967
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.2 +/- 19.6bp
Average Position of motif in Background9.6 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes2/MA0616.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGACACGGGG
TAACGACACGTGC
 A C G T A C G T A C G T A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C

Npas2/MA0626.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGACACGGGG-
-NACACGTGCN
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G A C G T
A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

Mycn/MA0104.3/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CGACACGGGG-
---CACGTGGC
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CGACACGGGG-
---CACGTGGN
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G A C G T
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T

Creb3l2/MA0608.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGACACGGGG-
--ACACGTGGC
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G A C G T
A C G T A C G T G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C

HEY2/MA0649.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGACACGGGG-
-GACACGTGCC
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G A C G T
A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGACACGGGG
-GHCACGTG-
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G
A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGACACGGGG
--ACACGTGC
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G
A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

HEY1/MA0823.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGACACGGGG-
-GACACGTGCC
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G A C G T
A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGACACGGGG
-GNCACGTG-
 A G T C A C T G C G T A A G T C C G T A G T A C A C T G A C T G A C T G A C T G
A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T