Information for 3-CHGCCTCGGCTTTGTG (Motif 4)

A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G
Reverse Opposite:
A G T C G T C A G T A C C G T A C G T A C T G A A C T G A G T C G T A C C T A G G C T A C T A G A C T G A T G C C T A G C T A G
p-value:1e-12
log p-value:-2.985e+01
Information Content per bp:1.783
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.8 +/- 11.5bp
Average Position of motif in Background21.9 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.63
Offset:9
Orientation:forward strand
Alignment:CHGCCTCGGCTTTGTG
---------CTTTGT-
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.60
Offset:8
Orientation:forward strand
Alignment:CHGCCTCGGCTTTGTG--
--------CCWTTGTYYB
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CHGCCTCGGCTTTGTG
----BNTGDCCTTG--
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CHGCCTCGGCTTTGTG
------TGACCTTGAN
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CHGCCTCGGCTTTGTG-----
-----ANTCCTTTGTCTNNNN
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CHGCCTCGGCTTTGTG
--------CCWTTGTY
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.54
Offset:8
Orientation:forward strand
Alignment:CHGCCTCGGCTTTGTG--
--------YCTTTGTTCC
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CHGCCTCGGCTTTGTG
------TGACCTTGAV
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CHGCCTCGGCTTTGTG
GGGGCCGAGGCCTG---
 A C G T A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.53
Offset:8
Orientation:forward strand
Alignment:CHGCCTCGGCTTTGTG--
--------CCTTTGTTTT
 A G T C G A C T A T C G A G T C A G T C C G A T A G T C A C T G C T A G G T A C A G C T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T