Information for 21-GVCHCAGTGDHCA (Motif 39)

A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A G A C T A G T C C G T A G T A C A C G T A C T G C T A G A C T G A G T C A G T C
p-value:1e-4
log p-value:-1.080e+01
Information Content per bp:1.799
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets47.5 +/- 14.0bp
Average Position of motif in Background48.0 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GVCHCAGTGDHCA--
TGACCCAGTGACCTAC
 A C G T A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A A C G T A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GVCHCAGTGDHCA--
TGTTCCCATTGTGTACT
 A C G T A C G T A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GVCHCAGTGDHCA----
CGAACAGTGCTCACTAT
 A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GVCHCAGTGDHCA
--CCGATTGGCT-
 A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GVCHCAGTGDHCA
--NCCATTGTTC-
 A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GVCHCAGTGDHCA
NAGGTCACNNTGACC-
 A C G T A C G T A C G T A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GVCHCAGTGDHCA
---CCATTGTTC-
 A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A
A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GVCHCAGTGDHCA--
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GVCHCAGTGDHCA-
AGGTCANTGACCTN
 A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GVCHCAGTGDHCA-
----CAAAGGTCAG
 A C T G T A C G A G T C G A C T A G T C C G T A A C T G A C G T A C T G C G T A G A C T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G