Information for 20-CVCGACCCTGACC (Motif 35)

G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C
Reverse Opposite:
A C T G A C T G A G C T A G T C C G T A A C T G A T C G A C T G C G A T A G T C A C T G A C G T A C T G
p-value:1e-5
log p-value:-1.154e+01
Information Content per bp:1.782
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif19.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets67.3 +/- 20.8bp
Average Position of motif in Background44.9 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CVCGACCCTGACC-
--TGACCTTGACCT
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T
A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:CVCGACCCTGACC-
--------TGACCT
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CVCGACCCTGACC-
--TGACCTTGACCT
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T
A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:CVCGACCCTGACC---
--------TGACCYCT
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:CVCGACCCTGACC---
--------TGACCTYA
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CVCGACCCTGACC-------
----NNNNTGACCCGGCGCG
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:CVCGACCCTGACC-----
--------TGACCTTGAT
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CVCGACCCTGACC----
-------CTGACCTTTG
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CVCGACCCTGACC-------
----NNCNTGACCCCGCTCT
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CVCGACCCTGACC
---ATGCCAGACN
 G T A C T C G A A G T C C T A G C G T A G T A C A T G C A G T C C G A T A C T G C T G A A G T C A G T C
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C