Information for 16-GGAMYASRGGYCAGTG (Motif 29)

A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A G C T A C T G C T A G T A G C A G T C A G C T A T G C A C G T C T A G A C T G A C G T A G T C A G T C
p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.866
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 15.5bp
Average Position of motif in Background22.9 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GGAMYASRGGYCAGTG----
------NAGGTCANTGACCT
 A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGAMYASRGGYCAGTG
----CAAAGGTCAG--
 A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GGAMYASRGGYCAGTG
-----AGRGGTCA---
 A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGAMYASRGGYCAGTG
TGGGGCAAAGGTCA---
 A C G T A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAMYASRGGYCAGTG
GTAGGGCAAAGGTCA---
 A C G T A C G T A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGAMYASRGGYCAGTG--
-GGCGAGGGGTCAAGGGC
 A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGAMYASRGGYCAGTG
GAGGTCAAAAGGTCA---
 A C G T A C G T A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGAMYASRGGYCAGTG
AGAGTCCAAAGTCCA---
 A C G T A C G T A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGAMYASRGGYCAGTG
-----TRAGGTCA---
 A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GGAMYASRGGYCAGTG
-------AGGTCA---
 A C T G A C T G C G T A G T A C A G T C G T C A A T C G C T G A A C T G A C T G A G T C A G T C C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T