Information for 4-ATCYAGCATGKTG (Motif 11)

T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G
Reverse Opposite:
A G T C C T G A T G C A A T G C G T C A A C G T A T C G G T A C A G C T C T G A C T A G C G T A A C G T
p-value:1e-9
log p-value:-2.154e+01
Information Content per bp:1.742
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets48.4 +/- 27.5bp
Average Position of motif in Background50.8 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATCYAGCATGKTG
GYCATCMATCAT----
 A C G T A C G T A C G T T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATCYAGCATGKTG
GGCTCYAKCAYC---
 A C G T A C G T T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATCYAGCATGKTG--
CTACTAGGATGTNNTN
 A C G T T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ATCYAGCATGKTG
TCATCAATCA-----
 A C G T A C G T T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:ATCYAGCATGKTG-----
---NNTCCTGCTGTGNNN
 T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ATCYAGCATGKTG
RGCCATYAATCA-----
 A C G T A C G T A C G T A C G T T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ATCYAGCATGKTG
CCATCAATCAAA---
 A C G T A C G T T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ATCYAGCATGKTG
GGTCTGGCAT----
 A C G T T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:ATCYAGCATGKTG-----
---TCNCCTGCTGNGNNN
 T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:ATCYAGCATGKTG---
------CCTGCTGAGH
 T C G A A C G T A G T C G A C T C T G A A C T G A T G C C G T A A C G T A T C G A C G T A G C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A