Information for 3-GGTCTGGCCTTAG (Motif 6)

A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
Reverse Opposite:
A G T C G A C T C T G A C G T A C T A G A T C G G A T C A G T C C T G A A T C G T G C A A G T C G T A C
p-value:1e-13
log p-value:-3.042e+01
Information Content per bp:1.720
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets50.0 +/- 26.6bp
Average Position of motif in Background55.7 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GGTCTGGCCTTAG
---CTGACCTTTG
 A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGTCTGGCCTTAG
GGTCTGGCAT---
 A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GGTCTGGCCTTAG
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GGTCTGGCCTTAG-
----TGACCTTGAV
 A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGCCTTAG
CTGTCTGG------
 A C G T A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GGTCTGGCCTTAG-
----TGACCTTGAN
 A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GGTCTGGCCTTAG
----TGACCTYA-
 A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGTCTGGCCTTAG
VBSYGTCTGG------
 A C G T A C G T A C G T A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGTCTGGCCTTAG
--BNTGDCCTTG-
 A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGTCTGGCCTTAG
---NTGACCTTGA
 A C T G T A C G A C G T A T G C A G C T T C A G C T A G A T G C A G T C A C G T A G C T C T G A A C T G
A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A