Information for 5-AAAAAAAMMMCBD (Motif 16)

C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
Reverse Opposite:
G T C A T A C G A C T G C A T G A C G T A C T G G A C T A C G T G A C T G C A T C G A T A C G T G C A T
p-value:1e-3
log p-value:-8.375e+00
Information Content per bp:1.526
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif205.9
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets49.2 +/- 25.4bp
Average Position of motif in Background51.8 +/- 39.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----AAAAAAAMMMCBD
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------AAAAAAAMMMCBD
TACTGGAAAAAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAAAMMMCBD
GTTCAAAAAAAAAATTC-
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAAAMMMCBD
CTACCAATAAAATTCT--
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAMMMCBD
CCAATAAAAA-----
 A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAAAMMMCBD
AGCCGAAAAAAAAAT---
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AAAAAAAMMMCBD
AAACAAACATTC-
 C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAMMMCBD
CCAATAAAAA-----
 A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAMMMCBD
CCAATAAAAC-----
 A C G T A C G T C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAAAAAAMMMCBD
AAATAAACA----
 C G T A T G C A C G T A C G T A C G T A T G C A C G T A T G A C G T C A G T A C T G A C A T G C C A G T
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T