Information for 1-GCGGASCTGAGGA (Motif 1)

A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
Reverse Opposite:
C G A T G T A C A G T C C G A T A G T C C G T A C T A G A T C G A C G T A G T C G T A C A C T G A G T C
p-value:1e-18
log p-value:-4.288e+01
Information Content per bp:1.834
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.9 +/- 26.0bp
Average Position of motif in Background50.6 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCGGASCTGAGGA
NCGCGGACGTTG---
 A C G T A C G T A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCGGASCTGAGGA
-CGGAGC------
 A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCGGASCTGAGGA
-CGCAGCTGCG--
 A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:4
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCGGASCTGAGGA
RGKGGGCGGAGC------
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCGGASCTGAGGA-
NNTNCGCACCTGTNGAN
 A C G T A C G T A C G T A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A A C G T
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T

ETV6/MA0645.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCGGASCTGAGGA
AGCGGAAGTG----
 A C G T A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
T G C A A T C G T G A C C A T G C A T G C T G A C G T A T C A G A G C T C T A G A C G T A C G T A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----GCGGASCTGAGGA
AGGGGGCGGGGCTG----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCGGASCTGAGGA--
GGTCANYTGAGGWCA
 A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A A C G T A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCGGASCTGAGGA
CCTCACCTG----
 A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T

ETV5/MA0765.1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GCGGASCTGAGGA
ACCGGAAGTG----
 A C G T A C T G A G T C A C T G C T A G C G T A A T G C A G T C A C G T C T A G C G T A A C T G A C T G C G T A
C T G A T A G C T G A C A C T G A C T G G C T A G C T A T C A G A G C T C T A G A C G T A C G T A C G T A C G T