Information for 1-GCACACTCAA (Motif 5)

T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A
Reverse Opposite:
C G A T A C G T A C T G C G T A A T C G A G C T A T C G C A G T A T C G A G T C
p-value:1e-11
log p-value:-2.698e+01
Information Content per bp:1.680
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif7.20%
Number of Background Sequences with motif1271.6
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets55.9 +/- 23.7bp
Average Position of motif in Background49.2 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCACACTCAA
AASCACTCAA
 T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCACACTCAA-
AGCCACTCAAG
 T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCACACTCAA--
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCACACTCAA--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCACACTCAA-
-NSCACTYVAV
 T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCACACTCAA-
-RSCACTYRAG
 T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCACACTCAA
GCCACACCCA-
 A C G T T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCACACTCAA
CRCCCACGCA-
 A C G T T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T

EGR4/MA0733.1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCACACTCAA--
TTACGCCCACGCATTT
 A C G T A C G T A C G T A C G T T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A A C G T A C G T
G A C T G A C T G T C A A G T C C A T G A G T C T G A C A G T C G T C A A G T C A T C G A G T C T G C A G C A T G C A T G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCACACTCAA
MRSCACTYAA
 T C A G A T G C G T C A T A G C T C G A A T G C G C A T T G A C T G C A G C T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A