Information for 4-AGCAGGGTAC (Motif 13)

C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
Reverse Opposite:
A C T G C A G T C G T A G T A C T G A C A G T C C A G T A C T G A G T C A C G T
p-value:1e-10
log p-value:-2.315e+01
Information Content per bp:1.859
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif114.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets48.3 +/- 21.2bp
Average Position of motif in Background50.4 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGGTAC
CACAGCAGGGGG-
 A C G T A C G T A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGGGTAC-
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGGGTAC
DCTCAGCAGG----
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGGTAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGGTAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGGTAC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGCAGGGTAC
CAGCC------
 A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGCAGGGTAC-----
GCTGGGGGGTACCCCTT
 A C G T A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C A C G T A C G T A C G T A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCAGGGTAC------
ACTCCAAGTACTTGGAA
 A C G T C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGCAGGGTAC
ANCAGGATGT
 C G T A A C T G A G T C G C T A A C T G A C T G A C T G A C G T G T C A G T A C
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T