Information for 1-CACCAGCCAGCCT (Motif 5)

A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
Reverse Opposite:
C G T A A T C G A C T G A G T C A C G T A C T G A T C G A G T C A C G T A C T G A C T G C G A T A C T G
p-value:1e-12
log p-value:-2.916e+01
Information Content per bp:1.913
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.1 +/- 27.9bp
Average Position of motif in Background31.1 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CACCAGCCAGCCT
--CCAGACAG---
 A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CACCAGCCAGCCT
SNGCACCTGCHS----
 A C G T A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CACCAGCCAGCCT
NNCACCTGNN-----
 A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CACCAGCCAGCCT
TACACCTGTC-----
 A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
C A G T T C G A A G T C C T G A A T G C T A G C C G A T T C A G A G C T G A T C A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CACCAGCCAGCCT
-------CAGCC-
 A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CACCAGCCAGCCT-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CACCAGCCAGCCT
--CCAGACRSVB-
 A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CACCAGCCAGCCT
--BCAGACWA---
 A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CACCAGCCAGCCT----
--SCAGYCADGCATGAC
 A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CACCAGCCAGCCT
----AGCGCGCC-
 A G T C C G T A A G T C A G T C C G T A A C T G A T G C G T A C C G T A A C T G A G T C A T G C A C G T
A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T