Information for 14-GGCATCGCCTGTGTGC (Motif 42)

A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C
Reverse Opposite:
A C T G A G T C C G T A A T G C G C T A A G T C C G T A C A T G A T C G G T A C T A C G T G C A C G A T A T C G T A G C G T A C
p-value:1e-5
log p-value:-1.165e+01
Information Content per bp:1.693
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif74.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets42.3 +/- 26.4bp
Average Position of motif in Background49.9 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GGCATCGCCTGTGTGC----
----NNGCGTGTGTGCNGCN
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GGCATCGCCTGTGTGC----
----NNNNTTGTGTGCTTNN
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGCATCGCCTGTGTGC
------VBSYGTCTGG
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GGCATCGCCTGTGTGC-----
-----GGGCCGTGTGCAAAAA
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:8
Orientation:forward strand
Alignment:GGCATCGCCTGTGTGC
--------CTGTCTGG
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GGCATCGCCTGTGTGC--
-------CTTGAGTGGCT
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.50
Offset:7
Orientation:forward strand
Alignment:GGCATCGCCTGTGTGC
-------GCTGTG---
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.50
Offset:9
Orientation:forward strand
Alignment:GGCATCGCCTGTGTGC
---------TGCGTG-
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.49
Offset:8
Orientation:forward strand
Alignment:GGCATCGCCTGTGTGC
--------TWGTCTGV
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGCATCGCCTGTGTGC
-GTCATGCHTGRCTGS
 A C T G A T C G A T G C C G T A A C G T A G T C A C T G A T G C G A T C A C G T A C T G C A G T A T C G C G A T A C T G G T A C
A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C