Information for 9-AACGTGTAGA (Motif 41)

C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
Reverse Opposite:
A C G T A G T C A G C T G T C A A G T C C G T A A G T C C T A G A C G T A C G T
p-value:1e-5
log p-value:-1.337e+01
Information Content per bp:1.870
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 25.0bp
Average Position of motif in Background66.4 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt/MA0004.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AACGTGTAGA
CACGTG----
 C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AACGTGTAGA
---GTGGAT-
 C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T

SA0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AACGTGTAGA----------
AANGTGAAGNANNGTNAAGG
 C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C T A G A C T G A C G T C T A G T C G A T C G A C T A G C G T A C T G A T C A G C T A G C T A G C G A T C G T A C G T A C T G A T C A G C T A G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AACGTGTAGA
GGACGTGC---
 A C G T C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AACGTGTAGA
RTACGTGC---
 A C G T C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AACGTGTAGA--
--CGTCTAGACA
 C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A A C G T A C G T
A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AACGTGTAGA
NVCACGTG----
 A C G T A C G T C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AACGTGTAGA
GCACGTGT---
 A C G T C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AACGTGTAGA
GGCACGTGTC--
 A C G T A C G T C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AACGTGTAGA
GGGTACGTGC---
 A C G T A C G T A C G T C G T A G T C A A G T C A C T G A C G T A C T G A C G T C T G A A C T G C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T