Information for 4-CAAGGACAGA (Motif 27)

A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
Reverse Opposite:
C G A T A G T C A C G T A C T G A C G T A G T C G A T C C G A T A G C T A T C G
p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.824
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.28%
Number of Background Sequences with motif269.9
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets49.6 +/- 30.7bp
Average Position of motif in Background50.4 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CAAGGACAGA
CAAGGHCANV
 A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CAAGGACAGA
BTCAAGGTCA--
 A C G T A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CAAGGACAGA
NTCAAGGTCA--
 A C G T A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGACAGA
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CAAGGACAGA
CCAGGAACAG-
 A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGACAGA
TCAAGGTCAN-
 A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAAGGACAGA
CAAAGGTCAG-
 A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAAGGACAGA
TCAAGGTCATA
 A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAAGGACAGA
TCAAGGTCAT-
 A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAAGGACAGA---
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T A T G C C T G A C G T A C T A G T C A G T G C A G T A C C G T A A C T G G C T A A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A