Information for 9-CCCCCTCAGGACACTG (Motif 25)

A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A C T A G A C G T A C T G A C G T G T A C A G T C C A G T A C T G C G T A A C T G A C T G A C T G C T A G A C T G
p-value:1e-8
log p-value:-2.049e+01
Information Content per bp:1.880
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.6 +/- 26.7bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCCCCTCAGGACACTG
CCCCCTTGGGCCCC--
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCCCCTCAGGACACTG
--GCCTCAGGGCAT--
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCCCCTCAGGACACTG
--SCCTSAGGSCAW--
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CCCCCTCAGGACACTG
NNAGTCCCACTCNNNN-----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A A C G T A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCCCCTCAGGACACTG
TTCCCCCTAC--------
 A C G T A C G T A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCCCCTCAGGACACTG
TCACCTCTGGGCAG--
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CCCCCTCAGGACACTG
-----TRAGGTCA---
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CCCCCTCAGGACACTG-
-------AAAACAATGG
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CCCCCTCAGGACACTG----
------NAGGTCANTGACCT
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCCCCTCAGGACACTG
TGCCCNNAGGGCA---
 A G T C A G T C A G T C T A G C A G T C A C G T G T A C G C T A A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T