Information for 12-CCGGTGACCACGA (Motif 23)

A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G C G A T A T C G A C T G A C G T A G T C C G T A A T G C A T G C A C T G A C T G
p-value:1e-8
log p-value:-2.049e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.5 +/- 18.3bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CCGGTGACCACGA-
----TGACCTTGAT
 A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CCGGTGACCACGA
----TGACCYCT-
 A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCGGTGACCACGA---
TGTCGTGACCCCTTAAT
 A C G T A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCGGTGACCACGA
CNNTTGACCTTTG
 A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCGGTGACCACGA
---NTGACCTTGA
 A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCGGTGACCACGA
----TGACCT---
 A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CCGGTGACCACGA
----TGACCTYA-
 A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCGGTGACCACGA---
NNNNTTGACCCCTNNNN
 A C G T A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCGGTGACCACGA
TGACCTCTGACCCCN-
 A C G T A C G T A C G T A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCGGTGACCACGA
--NATGACCTTGA
 A G T C A G T C A T C G A T C G A C G T A C T G C G T A A G T C A T G C C G T A A G T C A C T G C G T A
A C G T A C G T C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A