Information for 4-TGAAGATACA (Motif 6)

A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A
Reverse Opposite:
A C G T C T A G A G C T C T G A A G C T G T A C A C G T A C G T A G T C C G T A
p-value:1e-8
log p-value:-1.863e+01
Information Content per bp:1.861
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif4.33%
Number of Background Sequences with motif62.9
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets55.8 +/- 26.6bp
Average Position of motif in Background52.6 +/- 36.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGAAGATACA----
ATGAATATTCATGAG
 A C G T A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A A C G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGAAGATACA
ATGMATATDC-
 A C G T A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGAAGATACA---
YATGCATATRCATRT
 A C G T A C G T A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGAAGATACA
NGAAGC----
 A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGAAGATACA--
-NTTGATACATT
 A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A A C G T A C G T
A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGAAGATACA
ATGAATATTC-
 A C G T A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------TGAAGATACA
NNTNTCATGAATGT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAAGATACA
TCCAATCCACA
 A C G T A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TGAAGATACA-
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

GATA3/MA0037.2/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGAAGATACA-
---AGATAAGA
 A C G T A C T G C G T A C G T A C A T G C T G A A G C T C T G A G A T C C G T A A C G T
A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A