Information for 1-CAAAAAGGGT (Motif 3)

G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T
Reverse Opposite:
C G T A T G A C A G T C A T G C A G C T G A C T A C G T A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.529e+01
Information Content per bp:1.849
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif4.81%
Number of Background Sequences with motif42.2
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets36.0 +/- 23.2bp
Average Position of motif in Background51.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAAAAAGGGT
AACAAAGG--
 G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAAAAAGGGT--
CAAGATGGCGGC
 G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAAAAAGGGT
CCATATATGG-
 A C G T G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAAAAAGGGT
RACAAWGG--
 G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAAAAGGGT---
-AAAACCGGTTTT
 G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAAAAAGGGT
AAAACAAAGG--
 A C G T A C G T G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAAAAAGGGT
NNATAAGGNN
 G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

PB0161.1_Rxra_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAAAAAGGGT-----
TCGCGAAGGTTGTACT
 A C G T G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CAAAAAGGGT
AACAAACAACAAGAG-
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAAAAAGGGT----
GGAGAAAGGTGCGA
 G T A C C G T A C G T A T G C A C G T A C T G A A T C G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A