Information for 18-TTTCAAGGCG (Motif 34)

A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G
Reverse Opposite:
T A G C C T A G T A G C A G T C A C G T C G A T A C T G T C G A G T C A C T G A
p-value:1e-9
log p-value:-2.162e+01
Information Content per bp:1.709
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.90%
Number of Background Sequences with motif76.7
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets56.9 +/- 27.4bp
Average Position of motif in Background49.4 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTTCAAGGCG-
-NTCAAGGTCA
 A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTTCAAGGCG---
AAGTTCAAGGTCAGC
 A C G T A C G T A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTTCAAGGCG-
-BTCAAGGTCA
 A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G A C G T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTCAAGGCG
TGGTTTCAGT---
 A C G T A C G T A C G T A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTTCAAGGCG--
-TTCAAGGTCAT
 A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G A C G T A C G T
A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTCAAGGCG
TTTAATTGCN
 A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTTCAAGGCG---
---CAAGGHCANV
 A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTTCAAGGCG
TTTGAAACCG
 A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TTTCAAGGCG--
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTTCAAGGCG--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T G T A C G C T A T G C A C T A G A T C G G A T C A T C G A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T