Information for 11-CAGCCAAGGA (Motif 28)

A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A
Reverse Opposite:
C G A T T A G C A G T C A C G T A C G T T A C G C T A G A T G C A C G T A C T G
p-value:1e-9
log p-value:-2.251e+01
Information Content per bp:1.842
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets51.1 +/- 26.2bp
Average Position of motif in Background34.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAAGGA
BCAGACWA---
 A C G T A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAAGGA----
SCAGYCADGCATGAC
 A C G T A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAAGGA
ACTAGCCAATCA
 A C G T A C G T A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAGCCAAGGA
-TGCCAA---
 A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGCCAAGGA
CAGCC-----
 A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGGA
CGTGCCAAG--
 A C G T A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGGA-----
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A A C G T A C G T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCCAAGGA-
AAGGCAAGTGT
 A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCAAGGA--
TCCCAGMCRAGCCCC
 A C G T A C G T A C G T A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAAGGA
CACAGN------
 A C G T A C G T A G T C C G T A A T C G A G T C A G T C G T C A T G C A A C T G A T C G G C T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T